assTL |
TL association between categories and sub-categories |
checkHeader |
Function to check the correctness of the headers. |
check_0_fieldsTA |
Checks the presence of 0 fields in TA |
check_area |
Check if TX files have the same area |
check_associations_category_TL |
Check corretness of TL categories |
check_bridles_length |
check of bridles length correctness |
check_consistencyTA_distance |
Consistency check of distance in TA |
check_consistencyTA_duration |
Consistency check of hauls duration in TA |
check_date_haul |
Check of date consistency |
check_depth |
Check between start depth and end depth |
check_dictionary |
Check of the dictionary of specific fields |
check_distance |
Check of distance consistency |
check_dm |
Check of "WING_OPENING" and "VERTICAL_OPENING" fields |
check_G1_G2 |
Check of length measurements for G1 and G2 species |
check_hauls_TATB |
Check of TA hauls in TB |
check_hauls_TATL |
Check presence of TA hauls in TL |
check_hauls_TBTA |
Check of TB hauls in TA |
check_hauls_TLTA |
Check presence of TL hauls in TA |
check_haul_species_TCTB |
Check species of TC in TB |
check_identical_records |
Check of identical records in TX tables |
check_individual_weightTC |
Check of observed and estimated total weight in the haul |
check_individual_weightTE |
Consistency of individual weights (according to length-weight relationship) |
check_length |
Check of length classes in TC |
check_length_class_codeTC |
Consistency check of LENGTH_CLASS |
check_mat_stages |
Consistency of maturity stages |
check_nbtotTB |
Check total number of individuals in TB |
check_nb_per_sexTC |
Consistency check of number of individuals |
check_nb_TE |
Consistency of number of individuals sampled for weight and ageing in TE |
check_nb_TE_rapa |
Consistency of number of individuals sampled for weight and ageing in rapa whelk TE table |
check_nm_TB |
Check of consistency in number per sex set "not mandatory" in TB |
check_no_empty_fields |
Check empty fields in TA, TB, TC, TE and TL |
check_numeric_range |
Check of the values range in specific fields |
check_position |
Plot of haul positions |
check_position_in_Med |
Check of haul position in Mediterranean Sea |
check_quadrant |
Check start and end quadrant for each haul |
check_quasiidentical_records |
Function checking the presence of quasi-identical records. |
check_raising |
Function checking if, in case of sub-sampling in TC, the Total number and the number per sex in TB is raised correctly |
check_rubincode |
Function checking the correctness of species MEDITS code and faunistic category according to TM reference list |
check_sex_inversion |
Function to verify the consistency of sex information about hermaphrodite species. |
check_smallest_mature |
Function to verify the consistency of maturity information respect to the smallest mature individual observed in literature. |
check_spawning_period |
Function to check the consistency of the maturity stages according to the spawning period. |
check_species_TBTC |
Function checking if all the target species in the catch data table (TB) are in Biological data table (TC) |
check_step_length_distr |
The function verifies that in TC the length measures are reported with the correct precision. |
check_stratum |
Function that checks the consistency between start and end depth according to the stratum. |
check_stratum_code |
Function to check the correct codification of the strata in haul data table (TA). |
check_subsampling |
Function to warn the user about the presence of subsamples <0.1 of the total catch. |
check_temperature |
Function to check the consistency of the temperature data stored in haul data table (TA). |
check_TE_TC |
Function to verify the consistency between individual data table (TE) and biological data table (TC) respect to number of individuals. |
check_type |
Consistency check of TYPE_OF_FILE field |
check_unique_valid_haul |
Function checking that among hauls with the same code, only one must be valid. |
check_weight |
Function that checks if number of individuals and total weight collected in the haul are consistent. |
check_weight_tot_nb |
Function to check if, when the weight is not null, also the number is not null. |
check_year |
Consistency check of YEAR field |
cood.conv |
Coordinates conversion tool |
create_catch |
Function to create the R-sufi file capt. |
create_haul |
Function to create R-sufi file containing haul data. |
create_length |
Function to create the R-sufi file taille. |
create_strata |
Function to create R-sufi file containing strata surface data. |
DataTargetSpecies |
Length and weight ranges |
graphs_TA |
Function for qualitative checks of shooting depth, warp length and wing opening in Haul data table (TA). |
GSAs |
List of GFCM Geographical subareas (GSAs) |
haul_at_sea |
Check of haul position on sea area |
list_g1_g2 |
List of G1 and G2 species |
LW |
Table of the Length-Weight parameters |
Maturity_parameters |
Maturity parameters |
mat_stages |
Table of maturity stages |
MedSea |
Shapefile of Mediterranean and Black Sea area |
printError |
Management of the error in logfile. |
RoMEBS |
R code to perform multiple checks on MEDITS-like Survey data (TA, TB, TC, TE and TL files) |
RoMEBS.wizard |
Wizard function for RoMEBS |
RSufi_files |
Function to concatenate the R-sufi files of the different years. |
scheme_individual_data |
Summary of the individual data collected by species |
Stratification |
Stratification |
TA |
TA |
TB |
TB |
TC |
TC |
TE |
TE |
templateTA |
Template haul data table (TA). |
templateTB |
Template catch data table (TB). |
templateTC |
Template biological data table (TC). |
templateTE |
Template individual data table (TE). |
templateTL |
TL table template |
TL |
TL |
TM_list |
TM list |